WGS of Janibacter limosus: strain P1(28)-3 - SRA

SRX17066021: WGS of Janibacter limosus: strain P1(28)-3
1 OXFORD_NANOPORE (MinION) run: 115,941 spots, 764.4M bases, 626.3Mb downloads

Design: Genomic DNA was extracted and purified using DNeasy Blood & Tissue KIT (Qiagen, Germany) according to manufacturer instructions. The SQK-LSK109 Ligation Sequencing Kit with the EXP-NBD104 and EXP-NBD114 Native Barcoding Expansion kits were used to prepare the library according to manufacturer instructions. The reads were basecalled and demultiplexed using the guppy_basecaller (v.5.0.11).

Submitted by: ARRIAM

Study: Genome sequencing and assembly of relic peas symbionts

PRJNA329489 • SRP101993 • All experiments • All runs

show Abstracthide Abstract

Vicia alpestris is endemic plant, which grows in Caucasus Mountains region: Armenia, Azerbaijan, Turkey, Georgia and Russian Federation. Since V. alpestris plants grow in hard-to-reach habitats at altitudes of 2700-3300m their microsymbionts were not studied until recent time. Some of these isolates fom V.alpestris nodules are similar to the evolutionary advanced forms like Rhizobium leguminosarum, other to evolutionary early symbionts (Bosea, Tardiphaga etc).

Sample:

SAMN23078441 • SRS14649161 • All experiments • All runs

Organism: Janibacter limosus

Library:

Name: JanLim-P1-28-3

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 115,941 spots, 764.4M bases, 626.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR21050824	115,941	764.4M	626.3Mb	2022-08-15

ID:: 23858254

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